Identification of novel miRNAs and their target genes from Populus szechuanica infected with Melampsora larici-populina.
Identifieur interne : 000900 ( Main/Exploration ); précédent : 000899; suivant : 000901Identification of novel miRNAs and their target genes from Populus szechuanica infected with Melampsora larici-populina.
Auteurs : Xin Liu [République populaire de Chine] ; Min Chen [République populaire de Chine] ; Xue Zhou [République populaire de Chine] ; Zhimin Cao [République populaire de Chine]Source :
- Molecular biology reports [ 1573-4978 ] ; 2019.
Descripteurs français
- KwdFr :
- ARN messager (composition chimique), ARN messager (génétique), Basidiomycota (MeSH), Conformation d'acide nucléique (MeSH), Interactions hôte-pathogène (génétique), Interférence par ARN (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Populus (génétique), Populus (microbiologie), Réaction de polymérisation en chaine en temps réel (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Sites de fixation (MeSH), microARN (composition chimique), microARN (génétique).
- MESH :
- composition chimique : ARN messager, microARN.
- génétique : ARN messager, Interactions hôte-pathogène, Maladies des plantes, Populus, microARN.
- microbiologie : Maladies des plantes, Populus.
- Basidiomycota, Conformation d'acide nucléique, Interférence par ARN, Phylogenèse, Réaction de polymérisation en chaine en temps réel, Régulation de l'expression des gènes végétaux, Sites de fixation.
English descriptors
- KwdEn :
- Basidiomycota (MeSH), Binding Sites (MeSH), Gene Expression Regulation, Plant (MeSH), Host-Pathogen Interactions (genetics), MicroRNAs (chemistry), MicroRNAs (genetics), Nucleic Acid Conformation (MeSH), Phylogeny (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Populus (genetics), Populus (microbiology), RNA Interference (MeSH), RNA, Messenger (chemistry), RNA, Messenger (genetics), Real-Time Polymerase Chain Reaction (MeSH).
- MESH :
- chemical , chemistry : MicroRNAs, RNA, Messenger.
- genetics : Host-Pathogen Interactions, MicroRNAs, Plant Diseases, Populus, RNA, Messenger.
- microbiology : Plant Diseases, Populus.
- Basidiomycota, Binding Sites, Gene Expression Regulation, Plant, Nucleic Acid Conformation, Phylogeny, RNA Interference, Real-Time Polymerase Chain Reaction.
Abstract
Two novel miRNAs were selected from a pre-constructed RNA library of Populus szechuanica infected with the foliar rust fungus Melampsora larici-populina in order to detect the genes regulated as targets of the miRNAs novel_mir_11 and novel_mir_357. The novel miRNAs were identified from P. szechuanica using stem-loop methods and their precursors were able to fold into a complete stem loop structure. The predicted target genes of the novel miRNAs were verified with RNA ligase-mediated 5' rapid amplification of cDNA ends (RLM-5'RACE). The full-length sequences of target genes, RPM1 and RPS2/5, in P. szechuanica were obtained through rapid amplification of cDNA ends (RACE) and officially named PsRPM1 and PsRPS2/5. These genes contain nucleotide binding site-leucine-rich repeats (NBS-LRR) domains typical of resistance genes. The expression levels of miRNAs and their target genes in different periods post infection were analysed with quantitative real-time PCR (qRT-PCR). After infection with the foliar rust fungus, the expression levels of the novel miRNAs and their target genes were dynamic. Both novel_mir_11 and novel_mir_357 negatively regulated the expression of their target genes. In this study, the regulatory effects of two novel miRNAs through their target genes were characterized to provide further mechanistic information regarding the interaction between Populus and a foliar rust fungus. Results of this study improve our understanding of the defence response mechanisms of Populus and will stimulate future work to characterize strategies to prevent and control Populus diseases.
DOI: 10.1007/s11033-019-04746-2
PubMed: 30859446
Affiliations:
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uniqKey="Liu X" first="Xin" last="Liu">Xin Liu</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea><wicri:noRegion>712100</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Min" sort="Chen, Min" uniqKey="Chen M" first="Min" last="Chen">Min Chen</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea><wicri:noRegion>712100</wicri:noRegion></affiliation></author><author><name sortKey="Zhou, Xue" sort="Zhou, Xue" uniqKey="Zhou X" first="Xue" last="Zhou">Xue Zhou</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea><wicri:noRegion>712100</wicri:noRegion></affiliation></author><author><name sortKey="Cao, Zhimin" sort="Cao, Zhimin" uniqKey="Cao Z" first="Zhimin" last="Cao">Zhimin Cao</name><affiliation wicri:level="1"><nlm:affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China. zmcao@nwafu.edu.cn.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100</wicri:regionArea><wicri:noRegion>712100</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular biology reports</title><idno type="eISSN">1573-4978</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (MeSH)</term><term>Binding Sites (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Host-Pathogen Interactions (genetics)</term><term>MicroRNAs (chemistry)</term><term>MicroRNAs (genetics)</term><term>Nucleic Acid Conformation (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Populus (genetics)</term><term>Populus (microbiology)</term><term>RNA Interference (MeSH)</term><term>RNA, Messenger (chemistry)</term><term>RNA, Messenger (genetics)</term><term>Real-Time Polymerase Chain Reaction (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN messager (composition chimique)</term><term>ARN messager (génétique)</term><term>Basidiomycota (MeSH)</term><term>Conformation d'acide nucléique (MeSH)</term><term>Interactions hôte-pathogène (génétique)</term><term>Interférence par ARN (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Phylogenèse (MeSH)</term><term>Populus (génétique)</term><term>Populus (microbiologie)</term><term>Réaction de polymérisation en chaine en temps réel (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Sites de fixation (MeSH)</term><term>microARN (composition chimique)</term><term>microARN (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>MicroRNAs</term><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ARN messager</term><term>microARN</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Host-Pathogen Interactions</term><term>MicroRNAs</term><term>Plant Diseases</term><term>Populus</term><term>RNA, Messenger</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN messager</term><term>Interactions hôte-pathogène</term><term>Maladies des plantes</term><term>Populus</term><term>microARN</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Basidiomycota</term><term>Binding Sites</term><term>Gene Expression Regulation, Plant</term><term>Nucleic Acid Conformation</term><term>Phylogeny</term><term>RNA Interference</term><term>Real-Time Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Basidiomycota</term><term>Conformation d'acide nucléique</term><term>Interférence par ARN</term><term>Phylogenèse</term><term>Réaction de polymérisation en chaine en temps réel</term><term>Régulation de l'expression des gènes végétaux</term><term>Sites de fixation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Two novel miRNAs were selected from a pre-constructed RNA library of Populus szechuanica infected with the foliar rust fungus Melampsora larici-populina in order to detect the genes regulated as targets of the miRNAs novel_mir_11 and novel_mir_357. The novel miRNAs were identified from P. szechuanica using stem-loop methods and their precursors were able to fold into a complete stem loop structure. The predicted target genes of the novel miRNAs were verified with RNA ligase-mediated 5' rapid amplification of cDNA ends (RLM-5'RACE). The full-length sequences of target genes, RPM1 and RPS2/5, in P. szechuanica were obtained through rapid amplification of cDNA ends (RACE) and officially named PsRPM1 and PsRPS2/5. These genes contain nucleotide binding site-leucine-rich repeats (NBS-LRR) domains typical of resistance genes. The expression levels of miRNAs and their target genes in different periods post infection were analysed with quantitative real-time PCR (qRT-PCR). After infection with the foliar rust fungus, the expression levels of the novel miRNAs and their target genes were dynamic. Both novel_mir_11 and novel_mir_357 negatively regulated the expression of their target genes. In this study, the regulatory effects of two novel miRNAs through their target genes were characterized to provide further mechanistic information regarding the interaction between Populus and a foliar rust fungus. Results of this study improve our understanding of the defence response mechanisms of Populus and will stimulate future work to characterize strategies to prevent and control Populus diseases.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30859446</PMID><DateCompleted><Year>2019</Year><Month>11</Month><Day>25</Day></DateCompleted><DateRevised><Year>2020</Year><Month>10</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-4978</ISSN><JournalIssue CitedMedium="Internet"><Volume>46</Volume><Issue>3</Issue><PubDate><Year>2019</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Molecular biology reports</Title><ISOAbbreviation>Mol Biol Rep</ISOAbbreviation></Journal><ArticleTitle>Identification of novel miRNAs and their target genes from Populus szechuanica infected with Melampsora larici-populina.</ArticleTitle><Pagination><MedlinePgn>3083-3092</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11033-019-04746-2</ELocationID><Abstract><AbstractText>Two novel miRNAs were selected from a pre-constructed RNA library of Populus szechuanica infected with the foliar rust fungus Melampsora larici-populina in order to detect the genes regulated as targets of the miRNAs novel_mir_11 and novel_mir_357. The novel miRNAs were identified from P. szechuanica using stem-loop methods and their precursors were able to fold into a complete stem loop structure. The predicted target genes of the novel miRNAs were verified with RNA ligase-mediated 5' rapid amplification of cDNA ends (RLM-5'RACE). The full-length sequences of target genes, RPM1 and RPS2/5, in P. szechuanica were obtained through rapid amplification of cDNA ends (RACE) and officially named PsRPM1 and PsRPS2/5. These genes contain nucleotide binding site-leucine-rich repeats (NBS-LRR) domains typical of resistance genes. The expression levels of miRNAs and their target genes in different periods post infection were analysed with quantitative real-time PCR (qRT-PCR). After infection with the foliar rust fungus, the expression levels of the novel miRNAs and their target genes were dynamic. Both novel_mir_11 and novel_mir_357 negatively regulated the expression of their target genes. In this study, the regulatory effects of two novel miRNAs through their target genes were characterized to provide further mechanistic information regarding the interaction between Populus and a foliar rust fungus. Results of this study improve our understanding of the defence response mechanisms of Populus and will stimulate future work to characterize strategies to prevent and control Populus diseases.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Xin</ForeName><Initials>X</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-9598-8629</Identifier><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chen</LastName><ForeName>Min</ForeName><Initials>M</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-7268-3208</Identifier><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Xue</ForeName><Initials>X</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-8573-2360</Identifier><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cao</LastName><ForeName>Zhimin</ForeName><Initials>Z</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-3632-9487</Identifier><AffiliationInfo><Affiliation>College of Forestry, Northwest A&F University, Yangling, Shaanxi, 712100, China. zmcao@nwafu.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>2017YFD0600103-4-2</GrantID><Agency>The national key research projects</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>03</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Mol Biol Rep</MedlineTA><NlmUniqueID>0403234</NlmUniqueID><ISSNLinking>0301-4851</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012333">RNA, Messenger</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="Y">Basidiomycota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001665" MajorTopicYN="N">Binding Sites</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009690" MajorTopicYN="N">Nucleic Acid Conformation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D034622" MajorTopicYN="N">RNA Interference</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012333" MajorTopicYN="N">RNA, Messenger</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060888" MajorTopicYN="N">Real-Time Polymerase Chain Reaction</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Expression</Keyword><Keyword MajorTopicYN="N">Identification</Keyword><Keyword MajorTopicYN="N">Melampsora larici-populina</Keyword><Keyword MajorTopicYN="N">Novel miRNA</Keyword><Keyword MajorTopicYN="N">Populus szechuanica</Keyword><Keyword MajorTopicYN="N">Target genes</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>12</Month><Day>20</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>03</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>3</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>11</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>3</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30859446</ArticleId><ArticleId IdType="doi">10.1007/s11033-019-04746-2</ArticleId><ArticleId IdType="pii">10.1007/s11033-019-04746-2</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Xin" sort="Liu, Xin" uniqKey="Liu X" first="Xin" last="Liu">Xin Liu</name></noRegion><name sortKey="Cao, Zhimin" sort="Cao, Zhimin" uniqKey="Cao Z" first="Zhimin" last="Cao">Zhimin Cao</name><name sortKey="Chen, Min" sort="Chen, Min" uniqKey="Chen M" first="Min" last="Chen">Min Chen</name><name sortKey="Zhou, Xue" sort="Zhou, Xue" uniqKey="Zhou X" first="Xue" last="Zhou">Xue Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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